Search results for " Ontologie"

showing 10 items of 33 documents

Reactome diagram viewer: data structures and strategies to boost performance

2017

Abstract Motivation Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. For web-based pathway visualization, Reactome uses a custom pathway diagram viewer that has been evolved over the past years. Here, we present comprehensive enhancements in usability and performance based on extensive usability testing sessions and technology developments, aiming to optimize the viewer towards the needs of the community. Results The pathway diagram viewer version 3 achieves consistently better performance, loading and rendering of 97% of the diagrams in Reactome in less than 1 s. Combining the multi-layer html5 canvas strategy with a space partit…

0301 basic medicineStatistics and ProbabilityDatabases FactualComputer scienceKnowledge BasesDatabases and OntologiesBiochemistryWorld Wide Web03 medical and health sciences0302 clinical medicineHumansMolecular BiologyInternetComputational BiologyData structureOriginal PapersComputer Science ApplicationsVisualizationComputational Mathematics030104 developmental biologyComputational Theory and Mathematics030220 oncology & carcinogenesisScalabilityAlgorithmsMetabolic Networks and PathwaysSoftwareBioinformatics
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L'animismo rivisitato e i dibattiti sulle ontologie indigene

2014

Nell'articolo viene analizzata la recente interpretazione della nozione di animismo in antropologia legandola allo sviluppo del dibattito teorico sulle cosiddette 'ontologie indigene' e sui concetti di persona. Da questo punto di vista l'opera di Hallowell ha ispirato molti dei filoni di riflessione contemporanea su questi temi. Tra questi filoni, si possono annoverare: l'antropologia cognitiva di Boyer, l'antropologia fenomenologica di Ingold e Bird-David, la teoria degli schemi della pratica di Descola, la teoria del "prospettivismo amerindiano" di Viveiros de Castro. Dopo avere esaminato i caratteri e i limiti di ognuno di questi filoni, l'articolo si sofferma sulle posizioni più recenti…

Animismo personhoodprospettivismo ontologie indigene popolazioni amerindianeAnimismo personhood prospettivismo ontologie indigene popolazioni amerindianeSettore M-DEA/01 - Discipline Demoetnoantropologiche
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Semantic technologies for industry: From knowledge modeling and integration to intelligent applications

2013

Artificial Intelligence technologies are growingly used within several software systems ranging from Web services to mobile applications. It is by no doubt true that the more AI algorithms and methods are used the more they tend to depart from a pure "AI" spirit and end to refer to the sphere of standard software. In a sense, AI seems strongly connected with ideas, methods and tools that are not (yet) used by the general public. On the contrary, a more realistic view of it would be a rich and pervading set of successful paradigms and approaches. Industry is currently perceiving semantic technologies as a key contribution of AI to innovation. In this paper a survey of current industrial expe…

Computer scienceKnowledge RepresentationRecommender systemcomputer.software_genreNLPIndustrial ApplicationsWorld Wide WebKnowledge modelingSemantic TechnologiesArtificial Intelligencesemantic searchontologiesKnowledge Representation; Semantic Technologies; Industrial Applicationsinformation retrievalSoftware systembusiness.industrySemantic searchSketchBPMSemantic technologyApplications of artificial intelligenceNLP information retrieval semantic search recommender systems ontologies BPMrecommender systemsWeb servicebusinesscomputerIntelligenza Artificiale
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Domain-Specific OWL Ontology Visualization with OWLGrEd

2015

The OWLGrEd ontology editor allows graphical visualization and authoring of OWL 2.0 ontologies using a compact yet intuitive presentation that combines UML class diagram notation with textual Manchester syntax for expressions. We present an extension mechanism for OWLGrEd that allows adding custom information areas, rules and visual effects to the ontology presentation thus enabling domain specific OWL ontology visualizations. The usage of OWLGrEd and its extensions is demonstrated on ontology engineering examples involving custom annotation visualizations, advanced UML class dia-gram constructs and integrity constraints in semantic database schema design.

Computer sciencecomputer.internet_protocolProgramming languageOntology-based data integrationProcess ontologySuggested Upper Merged OntologyOntology (information science)computer.software_genreOntology engineeringOWL-SWorld Wide WebOpen Biomedical OntologiesUpper ontologycomputer
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Dalle geografie terracquee alla Wet Perspective: scie e onde del Mediterraneo Nero

2023

Beginning in the modern age, with the progressive conquest and discovery of the 'Outside', the sea became the leading element in the processes that have marked living in the sphere from then on (Sloterdijk, 2008). Although subject to mutations in time and space, the assumed terracqueous perspective moves away from the exclusivity of terracentrism towards a recognition of the centrality of the space of the sea. A space, on the one hand, that has become central to the production and reproduction of capital through accumulation and exploitation; on the other hand, a social, cultural, political space from which emerge the possibilities of breaking its structures of domination, power, hierarchis…

Critical Ocean GeographieSettore M-GGR/01 - GeografiaWet OntologieBlack Mediterranean
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Einübung in das Denken. Gérard Granels ‚Introduction‘ zu seiner Übersetzung von Martin Heideggers Was heißt Denken?

2018

Im Beitrag wird Gérard Granels "introduction“ zu seiner "traduction" von Heideggers "Was heißt Denken?" vorgestellt, die Ende der Fünfzigerjahre in Zusammenarbeit mit dem deutschen Aloys Becker entstand und 1959 erstmalig bei den Presses Universitaires de France erschien. Dieser sprachlich und gedanklich bemerkenswert dichte Übersetzungskommentar Granels ist im Hinblick auf die Frage nach dem Verhältnis von Theorie und Praxis des Übersetzens, die als Frage nach der Möglichkeit einer Überwindung gestellt wird, umso aufschlussreicher, als bereits die heideggersche Vorlage wesentlich um den Zusammenhang von Denken und Übersetzen, Sprachmaterialität und Sinnschöpfung kreist.

Granel Heidegger literarische Übersetzung Theorie Praxis Praxis Ontologie Sprache Denken Materialität SinnGranel Heidegger literary translation theory practice praxis ontology language thinking materiality senseSettore L-LIN/04 - Lingua E Traduzione - Lingua FranceseSettore M-FIL/01 - Filosofia Teoretica
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Database to Ontology Mapping Patterns in RDB2OWL Lite

2016

We describe the RDB2OWL Lite language for relational database to RDF/OWL mapping specification and discuss the architectural and content specification patterns arising in mapping definition. RDB2OWL Lite is a simplification of original RDB2OWL with aggregation possibilities and order-based filters removed, while providing in-mapping SQL view definition possibilities. The mapping constructs and their usage patterns are illustrated on mapping examples from medical domain: medicine registries and hospital information system. The RDB2OWL Lite mapping implementation is offered both via translation into D2RQ and into standard R2RML mapping notations.

Hospital information systemOpen Biomedical OntologiesInformation retrievalComputer scienceViewRelational databaseSemantic integrationcomputer.file_formatRDFNotationcomputerDomain (software engineering)
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Kant : métaphysique versus ontologie

2007

Kant[SHS.DROIT]Humanities and Social Sciences/Law[SHS.DROIT] Humanities and Social Sciences/Lawmétaphysique versus ontologie[ SHS.DROIT ] Humanities and Social Sciences/Law
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Swarming : An Investigation Practice Supporting a Bottom-up Ecological Transition

2022

Dans cet article, nous rendons compte des pratiques d’essaimage d’initiatives locales de transition portées par des collectifs citoyens et associatifs en région Bourgogne Franche-Comté. L’essaimage, défini comme une façon d’enquêter pour agir, caractérise un « activisme environnemental du faire » qui se structure de manière réticulaire et translocale. Ces multiples initiatives qui font des gestes du quotidien un levier de transformation écologique s’activent avec ou sans les institutions territoriales. Celles-ci, indépendamment de l’écho qu’elles renvoient à ces expérimentations, sont interpellées dans leur manière de concevoir l’action publique sous contrainte écologique forte.

MESH: Enquête[SHS.GEO] Humanities and Social Sciences/GeographyenquêteMESH: Développement durableMESH: Essaimage[SHS]Humanities and Social SciencesMESH: Transdisciplanaritétransition écologiqueTranslocalismeMESH: TranslocalMESH: Transition écologieMESH: Bottom-up democracyMESH: OntologiesMESH: Living labMESH: Circulationsmatérialisme durableMESH: Matérialisme durableMESH: Initiatives citoyennesEssaimageMESH: Action collectiveMESH: Transitions territorialesMESH: PréfigurationcirculationsMESH: Recherche participativeMESH: Activisme environnemental du faireMESH: Démocratie du FaireMESH: Environnementalisme ordinaireMESH: Transition socio-écologieMESH: Diffusion des idées et des pratiquesMESH: Écologie
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DeepSRE: Identification of sterol responsive elements and nuclear transcription factors Y proximity in human DNA by Convolutional Neural Network anal…

2021

SREBP1 and 2, are cholesterol sensors able to modulate cholesterol-related gene expression responses. SREBPs binding sites are characterized by the presence of multiple target sequences as SRE, NFY and SP1, that can be arranged differently in different genes, so that it is not easy to identify the binding site on the basis of direct DNA sequence analysis. This paper presents a complete workflow based on a one-dimensional Convolutional Neural Network (CNN) model able to detect putative SREBPs binding sites irrespective of target elements arrangements. The strategy is based on the recognition of SRE linked (less than 250 bp) to NFY sequences according to chromosomal localization derived from …

Metabolic ProcessesSettore MED/09 - Medicina InternaConservation BiologyGene ExpressionBiochemistryConservation ScienceData ManagementRegulation of gene expressionMultidisciplinaryGene OntologiesQRGenomicsLipidsPhylogeneticsCholesterolConservation GeneticsMedicineSettore MED/46 - Scienze Tecniche Di Medicina Di LaboratorioResearch ArticleComputer and Information SciencesSp1 Transcription FactorSequence analysisScienceDNA transcriptionComputational biologyBiologyData mining Deep Learning Genetics Transcription factorDNA-binding proteinsGeneticsHumansGene RegulationEvolutionary SystematicsBinding siteGeneTranscription factorTaxonomyEvolutionary BiologyModels GeneticEcology and Environmental SciencesBiology and Life SciencesComputational BiologyProteinsPromoterDNA PatternsDNASequence Analysis DNAGenome AnalysisRegulatory ProteinsSterol regulatory element-binding proteinMetabolismSerum Response ElementCCAAT-Binding FactorTranscription Factors
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